Key tools developed by our project described below. Click on each to learn more!!
ECOTOXXPLORER.CA

EcoToxXplorer.ca provides intuitive bioinformatics support for users to analyze EcoToxChip results as well as transcriptomics (e.g., RNA-seq) data.  It has been modeled on our successful cloud-based tools (metaboanalyst.ca; networkanalyst.ca).   Try it out!!  Go to the website, click on "RNAseq" (to the left), and then scroll down to "try our test data".
FASTBMD.CA

fastBMD.ca is a web-based tool that implements standardized methods for transcriptomics benchmark dose–response analysis in R. It is >60 times faster than the current leading software, supports transcriptomics data from 13 species, and offers a comprehensive analytical pipeline that goes from processing and normalization of raw gene expression values to interactive exploration of pathway-level benchmark dose results.

A TIMELINE OF THE DEVELOPMENT OF NEW APPROACH METHODOLOGIES
 Timeline content research led by Matthieu Mondou 
for the GE3LS research component.

Mapping Toxicogenomics

This interactive map lists 90+ entities and projects in the world that are involved in the emergent area of toxicogenomics. They include research projects and consortium, regulatory fora, and various knowledgebases, databases, and tools.

The map allows users to have a "bird's eye" view of this knowledge space. They can browse and engage the work of these organizations via their website for more information. A contact form allows users to provide feedback on new organizations.

To explore this interactive map, click on the following link:
http://sustainability-research.mcgill.ca/ecotoxchip/
Map design and content research led by Matthieu Mondou
Map development by Tássia Camões Araujo
for the GE3LS research component.